[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 3,340 items for (author: cho & y)

EMDB-44479:
Cryo-EM structure of synthetic claudin-4 complex with Clostridium perfringens enterotoxin C-terminal domain, sFab COP-2, and Nanobody
Method: single particle / : Vecchio AJ

EMDB-19856:
Focused map 1- K48-linked ubiquitin chain formation with a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2~donor UB~acceptor UB-SIL1 peptide
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-19857:
Focused map 2 - K48-linked ubiquitin chain formation with a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2~donor UB~acceptor UB-SIL1 peptide
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-19858:
Focused map 3 - K48-linked ubiquitin chain formation with a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2~donor UB~acceptor UB-SIL1 peptide
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-19859:
Focused map 4 - K48-linked ubiquitin chain formation with a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2~donor UB~acceptor UB-SIL1 peptide
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-19860:
Focused map 5 - K48-linked ubiquitin chain formation with a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2~donor UB~acceptor UB-SIL1 peptide
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-41877:
Cryo-EM structure of long form insulin receptor (IR-B) in the apo state
Method: single particle / : An W, Hall C, Li J, Huang A, Wu J, Park J, Bai XC, Choi E

EMDB-41878:
Cryo-EM structure of long form insulin receptor (IR-B) with four IGF2 bound, symmetric conformation.
Method: single particle / : An W, Hall C, Li J, Huang A, Wu J, Park J, Bai XC, Choi E

EMDB-41880:
Cryo-EM structure of long form insulin receptor (IR-B) with three IGF2 bound, asymmetric conformation.
Method: single particle / : An W, Hall C, Li J, Huang A, Wu J, Park J, Bai XC, Choi E

EMDB-43279:
Cryo-EM structure of short form insulin receptor (IR-A) with four IGF2 bound, symmetric conformation.
Method: single particle / : An W, Hall C, Li J, Huang A, Wu J, Park J, Bai XC, Choi E

EMDB-43280:
Cryo-EM structure of short form insulin receptor (IR-A) with three IGF2 bound, asymmetric conformation.
Method: single particle / : An W, Hall C, Li J, Huang A, Wu J, Park J, Bai XC, Choi E

PDB-8u4b:
Cryo-EM structure of long form insulin receptor (IR-B) in the apo state
Method: single particle / : An W, Hall C, Li J, Huang A, Wu J, Park J, Bai XC, Choi E

PDB-8u4c:
Cryo-EM structure of long form insulin receptor (IR-B) with four IGF2 bound, symmetric conformation.
Method: single particle / : An W, Hall C, Li J, Huang A, Wu J, Park J, Bai XC, Choi E

PDB-8u4e:
Cryo-EM structure of long form insulin receptor (IR-B) with three IGF2 bound, asymmetric conformation.
Method: single particle / : An W, Hall C, Li J, Huang A, Wu J, Park J, Bai XC, Choi E

PDB-8vjb:
Cryo-EM structure of short form insulin receptor (IR-A) with four IGF2 bound, symmetric conformation.
Method: single particle / : An W, Hall C, Li J, Huang A, Wu J, Park J, Bai XC, Choi E

PDB-8vjc:
Cryo-EM structure of short form insulin receptor (IR-A) with three IGF2 bound, asymmetric conformation.
Method: single particle / : An W, Hall C, Li J, Huang A, Wu J, Park J, Bai XC, Choi E

EMDB-36870:
Structure of full Banna virus
Method: single particle / : Li Z, Cao S

EMDB-36871:
In situ structure of RNA-dependent RNA polymerase in full BAV particles
Method: single particle / : Li Z, Cao S

EMDB-36872:
Structure of VP9 in Banna virus
Method: single particle / : Li Z, Cao S

EMDB-36880:
Structure of partial Banna virus
Method: single particle / : Li Z, Cao S

EMDB-36881:
Structure of Banna virus core
Method: single particle / : Li Z, Cao S

EMDB-37378:
Structure of full Banna virus
Method: single particle / : Li Z, Cao S

EMDB-37379:
Structure of partial Banna virus
Method: single particle / : Li Z, Cao S

EMDB-37380:
Structure of Banna virus core
Method: single particle / : Li Z, Cao S

PDB-8k42:
Structure of full Banna virus
Method: single particle / : Li Z, Cao S

PDB-8k43:
In situ structure of RNA-dependent RNA polymerase in full BAV particles
Method: single particle / : Li Z, Cao S

PDB-8k44:
Structure of VP9 in Banna virus
Method: single particle / : Li Z, Cao S

PDB-8k49:
Structure of partial Banna virus
Method: single particle / : Li Z, Cao S

PDB-8k4a:
Structure of Banna virus core
Method: single particle / : Li Z, Cao S

PDB-8w9p:
Structure of full Banna virus
Method: single particle / : Li Z, Cao S

PDB-8w9q:
Structure of partial Banna virus
Method: single particle / : Li Z, Cao S

PDB-8w9r:
Structure of Banna virus core
Method: single particle / : Li Z, Cao S

EMDB-43658:
SARS-CoV-2 S (C.37 Lambda variant) plus S309, S2L20, and S2X303 Fabs
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-43659:
SARS-CoV-2 S NTD (C.37 Lambda variant) plus S2L20 and S2X303 Fabs, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-43660:
SARS-CoV-2 S RBD (C.37 Lambda variant) plus S309 Fab, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vye:
SARS-CoV-2 S (C.37 Lambda variant) plus S309, S2L20, and S2X303 Fabs
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vyf:
SARS-CoV-2 S NTD (C.37 Lambda variant) plus S2L20 and S2X303 Fabs, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-8vyg:
SARS-CoV-2 S RBD (C.37 Lambda variant) plus S309 Fab, local refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-40208:
Backbone model of de novo-designed chlorophyll-binding nanocage O32-15
Method: single particle / : Redler RL, Ennist NM, Wang S, Baker D, Ekiert DC, Bhabha G

EMDB-40209:
Chlorophyll-binding region of de novo-designed nanocage O32-15
Method: single particle / : Redler RL, Ennist NM, Wang S, Baker D, Ekiert DC, Bhabha G

EMDB-41625:
Type IV pilus from Pseudomonas PAO1 strain
Method: single particle / : Thongchol J, Zhang J, Zeng L

EMDB-41632:
Asymmetric reconstruction of mature PP7 virions
Method: single particle / : Thongchol J, Zhang J, Zeng L

EMDB-41633:
Type IV pilus from Pseudomonas PAO1 strain with PP7 Maturation protein
Method: single particle / : Thongchol J, Zhang J, Zeng L

EMDB-41675:
The original consensus map of PP7 binding to T4P from PAO1
Method: single particle / : Thongchol J, Zhang J, Zeng L

EMDB-41780:
Composite map of PP7 binding to type IV pilus from PAO1
Method: single particle / : Thongchol J, Zhang J, Zeng L

PDB-8tum:
Type IV pilus from Pseudomonas PAO1 strain
Method: single particle / : Thongchol J, Zhang J, Zeng L

PDB-8tuw:
Type IV pilus from Pseudomonas PAO1 strain with PP7 Maturation protein
Method: single particle / : Thongchol J, Zhang J, Zeng L

PDB-8tux:
Capsid of mature PP7 virion with 3'end region of PP7 genomic RNA
Method: single particle / : Thongchol J, Zhang J, Zeng L

EMDB-41423:
Cryo-EM structure of DDB1dB:CRBN:Pomalidomide:SD40
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

EMDB-41424:
Cryo-EM structure of DDB1dB:CRBN:PT-179:SD40, conformation 1
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more